In-house software and tools

EFoldMine

ST resource  EFoldMine

Prediction of protein early folding regions from sequence only

Developers: Rita Pancsa, Daniele Raimondi,

Funding: G.0328.16N (FWO), Ph.D. grant Daniele Raimondi (IWT),

DisoMine

ST resource  DisoMine

Prediction of protein disorder from sequence only

Developers: Daniele Raimondi,

Funding: G.0328.16N (FWO), Ph.D. grant Daniele Raimondi (IWT),

ACPYPE

ST resource  ACPYPE

ACPYPE enables the generation of topology files for molecular dynamics simulations. It will be moved from its current location to the internal resources during late 2018/early 2019.

Developers: Wim Vranken,

Funding: No funding associated.

PhyloCys

ST resource  PhyloCys

PhyloCys is a tool to predict cysteine disulphide bonding patterns in proteins from evolutionary sequence information.

Developers: Daniele Raimondi,

Funding: BB2B 2010-1-12 (Innoviris), Ph.D. grant Daniele Raimondi (IWT),

Sephiroth

ST resource  Sephiroth

Sephiroth is a tool to predict the cysteine disulphide bonding pattern in proteins from evolutionary sequence information.

Developers: Daniele Raimondi,

Funding: BB2B 2010-1-12 (Innoviris), Ph.D. grant Daniele Raimondi (IWT),

Rigapollo

ST resource  Rigapollo

Rigapollo is an SVM-dependent pairwise HMM tool for protein pairwise alignments.

Developers: Daniele Raimondi,

Funding: G.0328.16N (FWO), Ph.D. grant Daniele Raimondi (IWT),

External software and tools from collaborations

RINspector

ST resource  RINspector

RINspector is a CytoScape app that combines protein-structure based network analysis with DynaMine predictions

CING

ST resource  CING

CING is a software suite for the validation of NMR structure ensembles.

SeRenDIP

ST resource  SeRenDIP

Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest; a key feature of this method are the DynaMine predictions