We research the relation between protein sequence and biophysical behaviour.

Biophysical Proteome Atlas

The Biophysical Proteome Atlas is a comprehensive framework for constructing biophysical proteomes. It facilitates the analysis of human protein sequences among other organisms from the UniProtKB proteome databases, employing the Bio2Byte tools (B2BTools) to predict biophysical features.

Traditionally, proteins are described in a single static state (a picture). It is now increasingly recognised that many proteins can adopt multiple states and move between these conformational states dynamically (a movie). Even more, not every protein has a well-defined three-dimensional structure, many are partly or fully disordered. These predictions describe backbone and side-chain dynamics, disorder, early folding events, beta-sheet aggregation and phase separation.

4

Domains

Archaea, Bacteria, Eukaryota, Viruses

9

Kingdoms

Animals, Fungi, Heunggongvirae, Methanobacteriati, Pararnavirae, Plants, Pseudomonadati, Thermoproteati, Thermotogati

21

Proteomes

97,614

Atlas entries

52,627

Entry views

Choose an organism

Each proteome below comes from UniProt's reference proteomes and carries the same predictions, so results are comparable between species. Open a proteome for its profile and search, or go straight to its entry list.


Most viewed proteins

What visitors are reading across every proteome in the atlas.

  1. 1 P04637 · TP53 P53_HUMAN Human 29 views
  2. 2 P52292 · KPNA2 IMA1_HUMAN Human 29 views
  3. 3 P0DMC2 · apela ELA_DANRE Zebrafish 23 views
  4. 4 P23572 · Cdk1 CDK1_DROME Fruit fly 19 views
  5. 5 B1V8A0 · unc-57 SH3GH_CAEEL Roundworm 17 views
  6. 6 P52285 · fpaA SKP1A_DICDI Social amoeba 17 views
  7. 7 A0A8M1NHK4 · rbm47 RBM47_DANRE Zebrafish 15 views
  8. 8 P03185 · NEC2 NEC2_EBVB9 Human herpesvirus 4 15 views
  9. 9 A0A2K3E7S8 · CHLRE_01g047229v5 CK5P3_CHLRE single-celled Green Alga 14 views
  10. 10 O05981 · rpl34e RL34_SULAC Sulfolobus acidocaldarius 14 views

How it works

Every entry is a canonical UniProt sequence. Predictions are computed with b2bTools and shown per residue, alongside a 3D model where one exists.

DynaMine
backbone and side-chain dynamics
DisoMine
disorder
EFoldMine
early folding
AgMata
beta-sheet aggregation
PSPer
phase separation

Your own sequences

Not every protein is in a reference proteome. The Bio2Byte online predictors run these same five predictors on any sequence you give them — one sequence or an alignment — and return the same per-residue values you see here.

Use it from code

Entries, provenance and predictions are all available over a documented REST API — no key required.

New here?

The help page is a guided tour of the atlas — find a protein, read its entry, download the data — with the human tumour suppressor P53 as the worked example.